Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14675 and 14676 are separated by 939 nucleotides14676 and 14677 are separated by 425 nucleotides14677 and 14678 are separated by 610 nucleotides14678 and 14679 are separated by 94 nucleotides mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494,501 to 498,811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499,751 to 502,382 14676 mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502,808 to 503,552 14677 mRNA_6310: 14678 - Hypothetical Protein, at 504,163 to 504,987 14678 mRNA_6311: 14679 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 505,082 to 507,881 14679
Group Condition mRNA_6307 mRNA_6308 mRNA_6309 mRNA_6310 mRNA_6311
14675 14676 14677 14678 14679
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -1.6 -0.4 -3.1 -0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -1.0 -0.5 -1.8 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.2 -0.1 -3.6 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -0.1 -1.1 -2.7 +0.9
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 -0.7 +0.2 -1.5 +0.5
growth on oleic acid YNB Glucose -0.0 -0.2 -0.1 -0.6 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.0 +0.0 -0.3 -0.5 -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.1 +0.1 -1.1 -0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.4 -0.4 -0.4 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 +1.2 -0.3 -1.2 -0.6
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.0 -0.0 -0.5 +0.3
growth on ricinoleic acid YNB Glucose +0.1 -0.8 -0.2 +0.1 +0.3
growth on ypd YPD +0.4 +0.5 -0.5 -0.7 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.3 -0.5 +0.2 -0.4
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.1 -0.4 +0.0 +0.1
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.4 -0.3 +0.9 -0.1
auxotrophy Dropout Complete +0.3 -0.4 -0.2 +0.2 +0.3
ypd buoyancy 40 hrs Median Buoyancy -0.0 +0.3 -0.2 -0.1 +0.2
growth on oleic acid YNB Oleic Acid +0.3 +0.2 -0.0 -0.5 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.3 -0.4 +1.0 -0.1
auxotrophy YNB Glucose +0.2 +0.1 -0.1 +0.8 +0.2
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