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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14677 and 14678 are separated by 610 nucleotides
14678 and 14679 are separated by 94 nucleotides
14679 and 14680 are separated by 466 nucleotides
14680 and 14681 are separated by 425 nucleotides
mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502,808 to 503,552
14677
mRNA_6310: 14678 - Hypothetical Protein, at 504,163 to 504,987
14678
mRNA_6311: 14679 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 505,082 to 507,881
14679
mRNA_6312: 14680 - K10754 RFC1 replication factor C subunit 1, at 508,348 to 511,991
14680
mRNA_6313: 14681 - K10592 HUWE1, MULE, ARF-BP1 E3 ubiquitin-protein ligase HUWE1, at 512,417 to 524,941
14681
Group
Condition
mRNA
_6309
mRNA
_6310
mRNA
_6311
mRNA
_6312
mRNA
_6313
14677
14678
14679
14680
14681
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-3.1
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-3.6
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-2.7
+0.9
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-1.8
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-1.2
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.5
-0.4
N.D.
N.D.
growth on ypd
YPD
-0.5
-0.7
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-1.1
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.6
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-1.5
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.4
+0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.5
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.0
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.5
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+0.2
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+1.0
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.9
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.8
+0.2
N.D.
N.D.
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