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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14678 and 14679 are separated by 94 nucleotides
14679 and 14680 are separated by 466 nucleotides
14680 and 14681 are separated by 425 nucleotides
14681 and 14682 are separated by 378 nucleotides
mRNA_6310: 14678 - Hypothetical Protein, at 504,163 to 504,987
14678
mRNA_6311: 14679 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 505,082 to 507,881
14679
mRNA_6312: 14680 - K10754 RFC1 replication factor C subunit 1, at 508,348 to 511,991
14680
mRNA_6313: 14681 - K10592 HUWE1, MULE, ARF-BP1 E3 ubiquitin-protein ligase HUWE1, at 512,417 to 524,941
14681
mRNA_6314: 14682 - K11426 SMYD SET and MYND domain-containing protein, at 525,320 to 527,665
14682
Group
Condition
mRNA
_6310
mRNA
_6311
mRNA
_6312
mRNA
_6313
mRNA
_6314
14678
14679
14680
14681
14682
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.6
+0.3
N.D.
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-3.1
-0.2
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-2.7
+0.9
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-1.8
-0.3
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.2
-0.6
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
-0.1
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.4
N.D.
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.5
+0.5
N.D.
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.6
-0.3
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.4
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.3
N.D.
N.D.
-0.2
growth on ypd
YPD
-0.7
-0.0
N.D.
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
-0.5
+0.1
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.3
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
N.D.
N.D.
+0.1
auxotrophy
Dropout Complete
+0.2
+0.3
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.1
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose
+0.8
+0.2
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.9
-0.1
N.D.
N.D.
+0.4
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