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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14681 and 14682 are separated by 378 nucleotides
14682 and 14683 are separated by 549 nucleotides
14683 and 14684 are separated by 243 nucleotides
14684 and 14685 are separated by 338 nucleotides
mRNA_6313: 14681 - K10592 HUWE1, MULE, ARF-BP1 E3 ubiquitin-protein ligase HUWE1, at 512,417 to 524,941
14681
mRNA_6314: 14682 - K11426 SMYD SET and MYND domain-containing protein, at 525,320 to 527,665
14682
mRNA_6315: 14683 - K10609 CUL4 cullin 4, at 528,215 to 531,333
14683
mRNA_6316: 14684 - Hypothetical Protein, at 531,577 to 532,542
14684
mRNA_6317: 14685 - K11649 SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C, at 532,881 to 534,866
14685
Group
Condition
mRNA
_6313
mRNA
_6314
mRNA
_6315
mRNA
_6316
mRNA
_6317
14681
14682
14683
14684
14685
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-1.4
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.7
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-1.2
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-1.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.7
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-1.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.6
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.6
+0.0
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
-0.9
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-1.0
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.6
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.5
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.4
+0.2
N.D.
auxotrophy
Dropout Complete
N.D.
-0.0
-0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
+0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.2
+0.2
N.D.
growth on ypd
YPD
N.D.
+0.4
+0.5
+0.3
N.D.
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