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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14697 and 14698 are separated by 245 nucleotides
14698 and 14699 are separated by 850 nucleotides
14699 and 14700 are separated by 268 nucleotides
14700 and 14701 are separated by 534 nucleotides
mRNA_6329: 14697 - BLAST clp1-like protein [Moniliophthora roreri MCA 2997], at 559,094 to 560,421
14697
mRNA_6330: 14698 - K03119 tauD taurine dioxygenase, at 560,667 to 562,112
14698
mRNA_6331: 14699 - Hypothetical Protein, at 562,963 to 566,521
14699
mRNA_6332: 14700 - KOG0725 Reductases with broad range of substrate specificities, at 566,790 to 568,565
14700
mRNA_6333: 14701 - K08852 ERN1 serine/threonine-protein kinase/endoribonuclease IRE1, at 569,100 to 573,400
14701
Group
Condition
mRNA
_6329
mRNA
_6330
mRNA
_6331
mRNA
_6332
mRNA
_6333
14697
14698
14699
14700
14701
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.2
-0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
-0.5
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
-0.5
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
-0.2
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
-0.9
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.0
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
+0.0
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
-0.5
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
+0.0
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.0
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose
+0.0
+0.3
-0.1
-0.1
N.D.
auxotrophy
Dropout Complete
-0.1
-0.2
+0.4
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
+0.1
+0.1
N.D.
growth on ypd
YPD
+0.3
-0.1
-0.2
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.3
+0.2
N.D.
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