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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14702 and 14703 are separated by 489 nucleotides
14703 and 14704 are separated by 336 nucleotides
14704 and 14705 are separated by 265 nucleotides
14705 and 14706 are separated by 64 nucleotides
mRNA_6334: 14702 - Hypothetical Protein, at 573,693 to 575,624
14702
mRNA_6335: 14703 - BLAST chloride channel protein 3 [Pseudozyma hubeiensis..., at 576,114 to 577,521
14703
mRNA_6336: 14704 - K14773 UTP23 U3 small nucleolar RNA-associated protein 23, at 577,858 to 579,187
14704
mRNA_6337: 14705 - Hypothetical Protein, at 579,453 to 580,646
14705
mRNA_6338: 14706 - KOG1515 Arylacetamide deacetylase, at 580,711 to 582,330
14706
Group
Condition
mRNA
_6334
mRNA
_6335
mRNA
_6336
mRNA
_6337
mRNA
_6338
14702
14703
14704
14705
14706
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.9
N.D.
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
N.D.
-0.5
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.7
N.D.
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.1
+0.0
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose
+0.3
-0.5
N.D.
-0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.2
N.D.
-0.5
+0.3
growth on oleic acid
YNB Glucose
-0.7
-0.1
N.D.
-0.2
-0.0
auxotrophy
Dropout Complete
+0.1
-0.3
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.0
N.D.
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.1
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
N.D.
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
N.D.
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.5
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.0
N.D.
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
N.D.
-0.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.0
N.D.
-0.3
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.1
N.D.
-0.1
+0.1
growth on ypd
YPD
+0.3
+0.1
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.0
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.4
N.D.
-0.1
+0.5
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