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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14710 and 14711 are separated by 390 nucleotides
14711 and 14712 are separated by 582 nucleotides
14712 and 14713 are separated by 286 nucleotides
14713 and 14714 are separated by 656 nucleotides
mRNA_6342: 14710 - KOG0756 Mitochondrial tricarboxylate/dicarboxylate carrier proteins, at 588,897 to 590,459
14710
mRNA_6343: 14711 - K12621 LSM2 U6 snRNA-associated Sm-like protein LSm2, at 590,850 to 591,445
14711
mRNA_6344: 14712 - KOG3525 Subtilisin-like proprotein convertase, at 592,028 to 595,751
14712
mRNA_6345: 14713 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 596,038 to 599,020
14713
mRNA_6346: 14714 - HMMPfam-Protein of unknown function (DUF938)-PF06080,SUPERFAMILY--SSF53335, at 599,677 to 600,627
14714
Group
Condition
mRNA
_6342
mRNA
_6343
mRNA
_6344
mRNA
_6345
mRNA
_6346
14710
14711
14712
14713
14714
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.4
-0.5
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
-0.3
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.1
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.3
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
N.D.
-0.3
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.3
-0.7
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
-0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.2
+0.5
-1.0
growth on oleic acid
YNB Oleic Acid
-0.5
N.D.
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
+0.0
-0.5
-0.1
growth on oleic acid
YNB Glucose
-0.4
N.D.
-0.2
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.1
+0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.2
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.2
+0.1
-0.2
growth on ypd
YPD
-0.5
N.D.
-0.0
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.3
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
+0.2
+0.4
+0.5
auxotrophy
YNB Glucose
-0.2
N.D.
+0.3
+0.4
+0.4
auxotrophy
Dropout Complete
-0.0
N.D.
+0.2
+0.3
+0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.5
+0.6
+0.8
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