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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14714 and 14715 are separated by 576 nucleotides
14715 and 14716 are separated by 78 nucleotides
14716 and 14717 are separated by 143 nucleotides
14717 and 14718 are separated by 575 nucleotides
mRNA_6346: 14714 - HMMPfam-Protein of unknown function (DUF938)-PF06080,SUPERFAMILY--SSF53335, at 599,677 to 600,627
14714
mRNA_6347: 14715 - Hypothetical Protein, at 601,204 to 601,756
14715
mRNA_6348: 14716 - K11373 ELP1, IKI3, IKBKAP elongator complex protein 1, at 601,835 to 607,122
14716
mRNA_6349: 14717 - BLAST NADH dehydrogenase [ubiquinone] 1 beta subcomplex..., at 607,266 to 607,793
14717
mRNA_6350: 14718 - K01749 hemC, HMBS hydroxymethylbilane synthase, at 608,369 to 610,484
14718
Group
Condition
mRNA
_6346
mRNA
_6347
mRNA
_6348
mRNA
_6349
mRNA
_6350
14714
14715
14716
14717
14718
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.8
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.1
-1.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
-0.9
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.4
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.5
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.1
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
-0.1
N.D.
N.D.
growth on ypd
YPD
+0.2
+0.6
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.6
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.3
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.8
+0.5
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.4
+0.6
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.9
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+0.9
+0.6
+0.4
N.D.
N.D.
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