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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14723 and 14724 are separated by 185 nucleotides
14724 and 14725 are separated by 308 nucleotides
14725 and 14726 are separated by 482 nucleotides
14726 and 14727 are separated by 1414 nucleotides
mRNA_6355: 14723 - KOG4532 WD40-like repeat containing protein, at 619,648 to 622,272
14723
mRNA_6356: 14724 - K01477 alc, ALLC allantoicase, at 622,458 to 625,058
14724
mRNA_6357: 14725 - HMMPfam-Ribonuclease-III-like-PF14622,SMART-Ribonuclease III family-SM00535,SUPERFAMILY--SSF69065, at 625,367 to 626,592
14725
mRNA_6358: 14726 - KOG1674 Cyclin, at 627,075 to 629,360
14726
mRNA_6359: 14727 - KOG1812 Predicted E3 ubiquitin ligase, at 630,775 to 633,081
14727
Group
Condition
mRNA
_6355
mRNA
_6356
mRNA
_6357
mRNA
_6358
mRNA
_6359
14723
14724
14725
14726
14727
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-4.0
N.D.
-0.7
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-3.2
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.7
N.D.
-1.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-2.4
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.8
N.D.
-0.4
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.6
N.D.
-0.3
+0.1
growth on oleic acid
YNB Glucose
-0.0
-0.4
N.D.
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
N.D.
-0.2
+0.0
auxotrophy
Dropout Complete
-0.2
-0.4
N.D.
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose
-0.1
-0.4
N.D.
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.4
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.3
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
N.D.
-0.0
+0.1
growth on ypd
YPD
-0.2
+0.1
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
N.D.
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.2
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
N.D.
+0.1
-0.1
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