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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14726 and 14727 are separated by 1414 nucleotides
14727 and 14728 are separated by 661 nucleotides
14728 and 14729 are separated by 763 nucleotides
14729 and 14730 are separated by 559 nucleotides
mRNA_6358: 14726 - KOG1674 Cyclin, at 627,075 to 629,360
14726
mRNA_6359: 14727 - KOG1812 Predicted E3 ubiquitin ligase, at 630,775 to 633,081
14727
mRNA_6360: 14728 - K17790 TIM22 mitochondrial import inner membrane translocase subunit TIM22, at 633,743 to 634,504
14728
mRNA_6361: 14729 - K08832 SRPK3, STK23 serine/threonine-protein kinase SRPK3, at 635,268 to 638,035
14729
mRNA_6362: 14730 - SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 638,595 to 641,031
14730
Group
Condition
mRNA
_6358
mRNA
_6359
mRNA
_6360
mRNA
_6361
mRNA
_6362
14726
14727
14728
14729
14730
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.3
N.D.
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
-0.0
N.D.
N.D.
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
N.D.
N.D.
-0.4
growth on oleic acid
YNB Glucose
-0.3
+0.2
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.3
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
N.D.
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
N.D.
N.D.
+0.1
auxotrophy
Dropout Complete
+0.0
+0.3
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
N.D.
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
N.D.
N.D.
-0.3
growth on ypd
YPD
+0.3
+0.1
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose
+0.1
+0.3
N.D.
N.D.
+0.3
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