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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14729 and 14730 are separated by 559 nucleotides
14730 and 14731 are separated by 66 nucleotides
14731 and 14732 overlap by 61 nucleotides
14732 and 14733 are separated by 157 nucleotides
mRNA_6361: 14729 - K08832 SRPK3, STK23 serine/threonine-protein kinase SRPK3, at 635,268 to 638,035
14729
mRNA_6362: 14730 - SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 638,595 to 641,031
14730
mRNA_6363: 14731 - K14553 UTP18 U3 small nucleolar RNA-associated protein 18, at 641,098 to 643,745
14731
mRNA_6364: 14732 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 643,685 to 645,198
14732
mRNA_6365: 14733 - HMMPfam-Trypsin-like peptidase domain-PF13365,SUPERFAMILY--SSF50494, at 645,356 to 646,894
14733
Group
Condition
mRNA
_6361
mRNA
_6362
mRNA
_6363
mRNA
_6364
mRNA
_6365
14729
14730
14731
14732
14733
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-1.0
-0.9
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
-2.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
-1.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.4
-1.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.3
-0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.6
+0.1
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.4
+0.5
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
-0.5
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.2
-0.7
-0.1
auxotrophy
Dropout Complete
N.D.
-0.1
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.1
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.7
+0.5
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.3
+0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.3
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.4
+0.1
-0.0
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.5
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-0.1
-0.0
+0.5
auxotrophy
YNB Glucose
N.D.
+0.3
+0.4
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.2
+0.0
+0.5
growth on ypd
YPD
N.D.
+0.0
-0.0
+1.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.5
+0.5
+0.4
+0.2
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