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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14732 and 14733 are separated by 157 nucleotides
14733 and 14734 are separated by 407 nucleotides
14734 and 14735 are separated by 743 nucleotides
14735 and 14736 are separated by 2124 nucleotides
mRNA_6364: 14732 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 643,685 to 645,198
14732
mRNA_6365: 14733 - HMMPfam-Trypsin-like peptidase domain-PF13365,SUPERFAMILY--SSF50494, at 645,356 to 646,894
14733
mRNA_6366: 14734 - BLAST putative membrane permease [Rhizoctonia solani 123E], at 647,302 to 648,659
14734
mRNA_6367: 14735 - Hypothetical Protein, at 649,403 to 649,822
14735
mRNA_6368: 14736 - KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily), at 651,947 to 653,420
14736
Group
Condition
mRNA
_6364
mRNA
_6365
mRNA
_6366
mRNA
_6367
mRNA
_6368
14732
14733
14734
14735
14736
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
-0.0
+0.4
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
-0.2
-0.1
N.D.
-1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
-0.6
-0.1
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
-0.3
N.D.
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.4
-0.0
N.D.
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
-0.5
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.1
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
-0.3
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.6
-0.1
N.D.
+0.8
auxotrophy
YNB Glucose
-0.1
+0.3
-0.3
N.D.
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
+0.2
N.D.
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-0.3
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
+0.0
-0.4
-0.0
N.D.
-0.1
growth on ypd
YPD
+1.4
-0.2
-0.2
N.D.
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.5
-0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.1
+0.2
N.D.
+0.3
auxotrophy
Dropout Complete
-0.3
+0.1
-0.2
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.2
-0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.5
-0.0
N.D.
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.3
-0.2
N.D.
+1.2
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