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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14733 and 14734 are separated by 407 nucleotides
14734 and 14735 are separated by 743 nucleotides
14735 and 14736 are separated by 2124 nucleotides
14736 and 14737 are separated by 1112 nucleotides
mRNA_6365: 14733 - HMMPfam-Trypsin-like peptidase domain-PF13365,SUPERFAMILY--SSF50494, at 645,356 to 646,894
14733
mRNA_6366: 14734 - BLAST putative membrane permease [Rhizoctonia solani 123E], at 647,302 to 648,659
14734
mRNA_6367: 14735 - Hypothetical Protein, at 649,403 to 649,822
14735
mRNA_6368: 14736 - KOG2049 Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily), at 651,947 to 653,420
14736
mRNA_6369: 14737 - Hypothetical Protein, at 654,533 to 654,766
14737
Group
Condition
mRNA
_6365
mRNA
_6366
mRNA
_6367
mRNA
_6368
mRNA
_6369
14733
14734
14735
14736
14737
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
N.D.
-1.0
-2.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.0
N.D.
-1.4
-0.8
growth on ypd
YPD
-0.2
-0.2
N.D.
-1.4
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.1
N.D.
+0.8
-2.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.2
N.D.
-0.8
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.4
N.D.
-1.1
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.1
N.D.
-0.7
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
-1.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.5
N.D.
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
N.D.
+0.3
-1.6
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
N.D.
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
N.D.
-0.6
+0.4
growth on oleic acid
YNB Oleic Acid
-0.4
-0.0
N.D.
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
N.D.
+0.0
+0.2
auxotrophy
YNB Glucose
+0.3
-0.3
N.D.
-0.6
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.2
N.D.
-0.4
+0.6
auxotrophy
Dropout Complete
+0.1
-0.2
N.D.
+0.3
+0.9
growth on ricinoleic acid
YNB Glucose
+0.5
-0.0
N.D.
+0.8
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
N.D.
+1.2
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
N.D.
-0.2
+2.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
N.D.
+0.2
+1.6
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