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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14737 and 14738 are separated by 1193 nucleotides
14738 and 14739 are separated by 454 nucleotides
14739 and 14740 are separated by 314 nucleotides
14740 and 14741 are separated by 527 nucleotides
mRNA_6369: 14737 - Hypothetical Protein, at 654,533 to 654,766
14737
mRNA_6370: 14738 - K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13, at 655,960 to 658,637
14738
mRNA_6371: 14739 - HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 659,092 to 660,021
14739
mRNA_6372: 14740 - BLAST similar to DNA repair protein Dds20/Mei5 [Botrytis ci..., at 660,336 to 661,808
14740
mRNA_6373: 14741 - K03013 RPB5, POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1, at 662,336 to 663,388
14741
Group
Condition
mRNA
_6369
mRNA
_6370
mRNA
_6371
mRNA
_6372
mRNA
_6373
14737
14738
14739
14740
14741
ypd buoyancy
40 hrs Low Buoyancy
-2.5
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.1
+0.8
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.1
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
-0.8
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-1.1
-0.1
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.4
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.6
+0.1
+0.9
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.4
N.D.
N.D.
growth on ypd
YPD
-0.4
+0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.3
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
+1.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.8
-0.5
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.1
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.9
-0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.6
+0.3
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.9
+0.5
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+2.2
-0.7
+0.6
N.D.
N.D.
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