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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14738 and 14739 are separated by 454 nucleotides
14739 and 14740 are separated by 314 nucleotides
14740 and 14741 are separated by 527 nucleotides
14741 and 14742 are separated by 378 nucleotides
mRNA_6370: 14738 - K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13, at 655,960 to 658,637
14738
mRNA_6371: 14739 - HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 659,092 to 660,021
14739
mRNA_6372: 14740 - BLAST similar to DNA repair protein Dds20/Mei5 [Botrytis ci..., at 660,336 to 661,808
14740
mRNA_6373: 14741 - K03013 RPB5, POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1, at 662,336 to 663,388
14741
mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663,767 to 666,324
14742
Group
Condition
mRNA
_6370
mRNA
_6371
mRNA
_6372
mRNA
_6373
mRNA
_6374
14738
14739
14740
14741
14742
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.8
N.D.
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
N.D.
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.3
N.D.
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
N.D.
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
-0.5
+0.2
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.6
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
N.D.
+0.1
growth on ypd
YPD
+0.0
+0.1
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.4
N.D.
N.D.
+0.2
auxotrophy
Dropout Complete
-0.2
+0.2
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.4
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
N.D.
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+1.1
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.0
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.9
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.5
N.D.
N.D.
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.5
N.D.
N.D.
+0.1
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