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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14741 and 14742 are separated by 378 nucleotides
14742 and 14743 are separated by 290 nucleotides
14743 and 14744 are separated by 360 nucleotides
14744 and 14745 are separated by 2280 nucleotides
mRNA_6373: 14741 - K03013 RPB5, POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1, at 662,336 to 663,388
14741
mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663,767 to 666,324
14742
mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666,615 to 668,807
14743
mRNA_6376: 14744 - K14811 DBP3 ATP-dependent RNA helicase DBP3, at 669,168 to 671,272
14744
mRNA_6377: 14745 - BLAST Williams-Beuren syndrome critical region protein 25 [..., at 673,553 to 674,016
14745
Group
Condition
mRNA
_6373
mRNA
_6374
mRNA
_6375
mRNA
_6376
mRNA
_6377
14741
14742
14743
14744
14745
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.4
+0.8
-1.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.2
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
+0.2
-0.4
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.1
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.1
+0.2
-0.0
auxotrophy
YNB Glucose
N.D.
+0.2
-0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.8
+0.1
-0.5
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.3
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.3
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.2
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.4
-0.6
+0.3
auxotrophy
Dropout Complete
N.D.
+0.2
+0.0
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-0.3
+0.4
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.6
-0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.5
-0.2
+0.4
+0.0
growth on ypd
YPD
N.D.
+0.0
+0.9
+0.1
+0.5
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