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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14745 and 14746 are separated by 1018 nucleotides
14746 and 14747 are separated by 780 nucleotides
14747 and 14748 are separated by 474 nucleotides
14748 and 14749 are separated by 202 nucleotides
mRNA_6377: 14745 - BLAST Williams-Beuren syndrome critical region protein 25 [..., at 673,553 to 674,016
14745
mRNA_6378: 14746 - K11884 PNO1, DIM2 RNA-binding protein PNO1, at 675,035 to 675,906
14746
mRNA_6379: 14747 - Hypothetical Protein, at 676,687 to 677,946
14747
mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678,421 to 679,401
14748
mRNA_6381: 14749 - Interpro F-box-like, at 679,604 to 681,699
14749
Group
Condition
mRNA
_6377
mRNA
_6378
mRNA
_6379
mRNA
_6380
mRNA
_6381
14745
14746
14747
14748
14749
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.3
-0.7
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.3
-0.6
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
+0.0
-1.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.3
-0.7
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
+0.1
-0.5
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
N.D.
-0.4
+0.6
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.2
-0.5
-0.0
auxotrophy
YNB Glucose
+0.3
N.D.
-0.5
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.4
-0.3
-0.2
auxotrophy
Dropout Complete
+0.4
N.D.
-0.4
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.1
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.2
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.1
-0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.0
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.4
-0.2
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.1
+0.0
+0.1
growth on ypd
YPD
+0.5
N.D.
-0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.1
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.2
+0.0
+0.4
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