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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14748 and 14749 are separated by 202 nucleotides
14749 and 14750 are separated by 581 nucleotides
14750 and 14751 are separated by 440 nucleotides
14751 and 14752 are separated by 291 nucleotides
mRNA_6380: 14748 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 678,421 to 679,401
14748
mRNA_6381: 14749 - Interpro F-box-like, at 679,604 to 681,699
14749
mRNA_6382: 14750 - Hypothetical Protein, at 682,281 to 684,206
14750
mRNA_6383: 14751 - Hypothetical Protein, at 684,647 to 685,455
14751
mRNA_6384: 14752 - K13201 TIA1, TIAL1 nucleolysin TIA-1/TIAR, at 685,747 to 687,315
14752
Group
Condition
mRNA
_6380
mRNA
_6381
mRNA
_6382
mRNA
_6383
mRNA
_6384
14748
14749
14750
14751
14752
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.5
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.0
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.3
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.5
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.2
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.4
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
-0.1
-0.2
N.D.
N.D.
growth on ypd
YPD
-0.1
-0.1
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
-0.1
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
+0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.4
+0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.5
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.3
-0.1
N.D.
N.D.
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