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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14753 and 14754 are separated by 540 nucleotides
14754 and 14755 are separated by 399 nucleotides
14755 and 14756 are separated by 887 nucleotides
14756 and 14757 are separated by 376 nucleotides
mRNA_6385: 14753 - K03107 SRP68 signal recognition particle subunit SRP68, at 687,746 to 690,070
14753
mRNA_6386: 14754 - KOG3043 Predicted hydrolase related to dienelactone hydrolase, at 690,611 to 691,768
14754
mRNA_6387: 14755 - Hypothetical Protein, at 692,168 to 693,043
14755
mRNA_6388: 14756 - HMMPfam-BRCA1 C Terminus (BRCT) domain-PF00533,ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 693,931 to 695,622
14756
mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695,999 to 699,737
14757
Group
Condition
mRNA
_6385
mRNA
_6386
mRNA
_6387
mRNA
_6388
mRNA
_6389
14753
14754
14755
14756
14757
growth on ypd
YPD
-1.2
-0.7
-0.3
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.3
-0.2
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
-0.5
-0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.7
-0.2
-0.0
-0.1
+0.4
auxotrophy
YNB Glucose
-1.5
+0.1
-0.7
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-1.2
+0.1
-0.9
+0.2
+0.3
growth on oleic acid
YNB Glucose
-1.2
-0.4
-0.3
+0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.3
-0.7
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
-0.1
+0.4
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.5
+0.4
-0.5
-0.0
+0.4
growth on ricinoleic acid
YNB Glucose
-0.9
-0.1
-0.3
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.4
+0.4
-0.2
+0.1
auxotrophy
Dropout Complete
-0.7
+0.3
-0.6
+0.2
+0.4
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
-0.2
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
-0.4
+0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.7
+0.6
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
-0.0
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+1.5
-1.1
+0.5
-0.7
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
+0.2
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.8
-0.4
+0.2
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.4
+0.9
-0.2
-0.2
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