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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14757 and 14758 are separated by 355 nucleotides
14758 and 14759 are separated by 424 nucleotides
14759 and 14760 are separated by 284 nucleotides
14760 and 14761 are separated by 219 nucleotides
mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695,999 to 699,737
14757
mRNA_6390: 14758 - KOG0605 NDR and related serine/threonine kinases, at 700,093 to 702,768
14758
mRNA_6391: 14759 - K11558 SPC25 kinetochore protein Spc25, fungi type, at 703,193 to 704,324
14759
mRNA_6392: 14760 - KOG4533 Uncharacterized conserved protein, at 704,609 to 706,220
14760
mRNA_6393: 14761 - KOG3823 Uncharacterized conserved protein, at 706,440 to 709,966
14761
Group
Condition
mRNA
_6389
mRNA
_6390
mRNA
_6391
mRNA
_6392
mRNA
_6393
14757
14758
14759
14760
14761
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.3
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.5
N.D.
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
N.D.
-0.1
+0.0
growth on ypd
YPD
+0.0
+0.1
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
N.D.
+0.2
+0.3
growth on oleic acid
YNB Glucose
+0.2
+0.1
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.6
N.D.
+0.6
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
N.D.
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.5
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose
+0.2
+0.3
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.2
N.D.
+0.2
-0.1
auxotrophy
Dropout Complete
+0.4
+0.2
N.D.
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.3
N.D.
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
N.D.
+0.6
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.2
N.D.
+0.7
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
N.D.
+0.5
+0.5
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