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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14758 and 14759 are separated by 424 nucleotides
14759 and 14760 are separated by 284 nucleotides
14760 and 14761 are separated by 219 nucleotides
14761 and 14762 are separated by 500 nucleotides
mRNA_6390: 14758 - KOG0605 NDR and related serine/threonine kinases, at 700,093 to 702,768
14758
mRNA_6391: 14759 - K11558 SPC25 kinetochore protein Spc25, fungi type, at 703,193 to 704,324
14759
mRNA_6392: 14760 - KOG4533 Uncharacterized conserved protein, at 704,609 to 706,220
14760
mRNA_6393: 14761 - KOG3823 Uncharacterized conserved protein, at 706,440 to 709,966
14761
mRNA_6394: 14762 - HMMPfam-Asparagine synthase-PF00733,SUPERFAMILY--SSF52402,SUPERFAMILY--SSF56235, at 710,467 to 712,891
14762
Group
Condition
mRNA
_6390
mRNA
_6391
mRNA
_6392
mRNA
_6393
mRNA
_6394
14758
14759
14760
14761
14762
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
+0.2
-0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
+0.2
+0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.1
+0.0
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.2
-0.1
-0.3
growth on ypd
YPD
+0.1
N.D.
-0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
N.D.
+0.6
+0.0
+0.3
auxotrophy
YNB Glucose
+0.3
N.D.
+0.1
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
+0.3
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.0
+0.3
+0.1
auxotrophy
Dropout Complete
+0.2
N.D.
+0.2
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
+0.4
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.0
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
+0.5
+0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.7
+0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.6
+0.4
+0.1
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