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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14765 and 14766 are separated by 447 nucleotides
14766 and 14767 are separated by 1 nucleotides
14767 and 14768 are separated by 423 nucleotides
14768 and 14769 are separated by 2328 nucleotides
mRNA_6397: 14765 - K02976 RP-S26e, RPS26 small subunit ribosomal protein S26e, at 719,574 to 720,317
14765
mRNA_6398: 14766 - K14556 DIP2, UTP12, WDR3 U3 small nucleolar RNA-associated protein 12, at 720,765 to 724,339
14766
mRNA_6399: 14767 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 724,341 to 725,780
14767
mRNA_6400: 14768 - K15720 N4BP2 NEDD4-binding protein 2, at 726,204 to 728,180
14768
mRNA_6401: 14769 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 730,509 to 731,692
14769
Group
Condition
mRNA
_6397
mRNA
_6398
mRNA
_6399
mRNA
_6400
mRNA
_6401
14765
14766
14767
14768
14769
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.8
-0.9
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-1.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.7
-0.9
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.4
-0.3
-1.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-0.7
-0.4
growth on ypd
YPD
N.D.
N.D.
-0.3
-1.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.6
-0.4
+0.8
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
-0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.5
-0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
-0.5
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.3
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.4
+0.7
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.1
+0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
+0.1
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
-0.1
+1.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
+0.3
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.0
+0.3
+0.5
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
-0.2
+1.3
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