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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14767 and 14768 are separated by 423 nucleotides
14768 and 14769 are separated by 2328 nucleotides
14769 and 14770 are separated by 260 nucleotides
14770 and 14771 are separated by 57 nucleotides
mRNA_6399: 14767 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 724,341 to 725,780
14767
mRNA_6400: 14768 - K15720 N4BP2 NEDD4-binding protein 2, at 726,204 to 728,180
14768
mRNA_6401: 14769 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 730,509 to 731,692
14769
mRNA_6402: 14770 - Hypothetical Protein, at 731,953 to 732,304
14770
mRNA_6403: 14771 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 732,362 to 733,777
14771
Group
Condition
mRNA
_6399
mRNA
_6400
mRNA
_6401
mRNA
_6402
mRNA
_6403
14767
14768
14769
14770
14771
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.7
-0.4
-2.0
-2.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
-0.9
-1.0
-1.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-1.2
-0.5
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.7
-0.9
-0.7
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.3
-1.1
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
-0.1
-1.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
-0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
+0.1
-0.6
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.4
+0.7
-0.6
-0.4
auxotrophy
YNB Glucose
-0.3
-0.2
+0.4
-0.6
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.5
+0.6
-1.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.7
-1.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.2
+0.6
-0.6
+0.2
growth on ypd
YPD
-0.3
-1.2
+0.1
+1.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.1
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.8
-0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.6
-0.4
+0.8
+0.4
-0.2
auxotrophy
Dropout Complete
-0.2
-0.2
+1.3
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
+0.7
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+1.1
+0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
+0.5
+0.7
-0.2
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