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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14769 and 14770 are separated by 260 nucleotides
14770 and 14771 are separated by 57 nucleotides
14771 and 14772 are separated by 28 nucleotides
14772 and 14773 are separated by 282 nucleotides
mRNA_6401: 14769 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 730,509 to 731,692
14769
mRNA_6402: 14770 - Hypothetical Protein, at 731,953 to 732,304
14770
mRNA_6403: 14771 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 732,362 to 733,777
14771
mRNA_6404: 14772 - K20280 TRAPPC5, TRS31 trafficking protein particle complex subunit 5, at 733,806 to 734,712
14772
mRNA_6405: 14773 - KOG0725 Reductases with broad range of substrate specificities, at 734,995 to 736,035
14773
Group
Condition
mRNA
_6401
mRNA
_6402
mRNA
_6403
mRNA
_6404
mRNA
_6405
14769
14770
14771
14772
14773
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-2.0
-2.1
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
-1.0
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-1.1
-0.1
+0.1
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.7
+0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.5
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-1.1
-0.2
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-1.0
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.6
+0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.7
-0.6
-0.4
N.D.
-0.1
auxotrophy
YNB Glucose
+0.4
-0.6
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-1.0
+0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.6
+0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.8
-0.3
-0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.7
-0.0
+0.0
N.D.
+0.1
auxotrophy
Dropout Complete
+1.3
-0.3
-0.2
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.7
-0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.8
+0.4
-0.2
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+1.1
+0.3
+0.3
N.D.
-0.5
growth on ypd
YPD
+0.1
+1.2
-0.2
N.D.
+0.3
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