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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14772 and 14773 are separated by 282 nucleotides
14773 and 14774 are separated by 861 nucleotides
14774 and 14775 are separated by 181 nucleotides
14775 and 14776 are separated by 111 nucleotides
mRNA_6404: 14772 - K20280 TRAPPC5, TRS31 trafficking protein particle complex subunit 5, at 733,806 to 734,712
14772
mRNA_6405: 14773 - KOG0725 Reductases with broad range of substrate specificities, at 734,995 to 736,035
14773
mRNA_6406: 14774 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 736,897 to 739,297
14774
mRNA_6407: 14775 - HMMPfam-Protein of unknown function (DUF952)-PF06108,SUPERFAMILY--SSF56399, at 739,479 to 740,196
14775
mRNA_6408: 14776 - K19308 BMT6 25S rRNA (uracil2843-N3)-methyltransferase, at 740,308 to 741,629
14776
Group
Condition
mRNA
_6404
mRNA
_6405
mRNA
_6406
mRNA
_6407
mRNA
_6408
14772
14773
14774
14775
14776
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.3
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
+0.0
-0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.5
-0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.1
-0.3
-0.4
auxotrophy
YNB Glucose
N.D.
-0.1
+0.1
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.1
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.2
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.0
+0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.1
-0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.2
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
-0.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
-0.1
+0.0
growth on ypd
YPD
N.D.
+0.3
-0.3
+0.5
-0.2
auxotrophy
Dropout Complete
N.D.
+0.2
-0.1
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.0
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.2
+0.2
+0.0
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