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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14774 and 14775 are separated by 181 nucleotides
14775 and 14776 are separated by 111 nucleotides
14776 and 14777 are separated by 250 nucleotides
14777 and 14778 are separated by 641 nucleotides
mRNA_6406: 14774 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 736,897 to 739,297
14774
mRNA_6407: 14775 - HMMPfam-Protein of unknown function (DUF952)-PF06108,SUPERFAMILY--SSF56399, at 739,479 to 740,196
14775
mRNA_6408: 14776 - K19308 BMT6 25S rRNA (uracil2843-N3)-methyltransferase, at 740,308 to 741,629
14776
mRNA_6409: 14777 - KOG2806 Chitinase, at 741,880 to 743,909
14777
mRNA_6410: 14778 - HMMPfam-Peptidase inhibitor I9-PF05922,SUPERFAMILY--SSF54897, at 744,551 to 744,938
14778
Group
Condition
mRNA
_6406
mRNA
_6407
mRNA
_6408
mRNA
_6409
mRNA
_6410
14774
14775
14776
14777
14778
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.7
-0.1
-0.1
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
-0.5
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.4
+0.1
-1.0
auxotrophy
YNB Glucose
+0.1
-0.2
-0.4
-0.0
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.3
+0.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
-0.2
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.2
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
+0.0
-0.3
-0.4
auxotrophy
Dropout Complete
-0.1
+0.3
+0.0
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+0.0
+0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
+0.1
+0.1
-0.3
growth on oleic acid
YNB Glucose
-0.2
+0.2
+0.2
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
+0.1
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.4
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.0
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.0
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
+0.2
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
+0.1
+0.1
+0.0
growth on ypd
YPD
-0.3
+0.5
-0.2
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
-0.1
+0.4
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.0
-0.1
+0.4
+0.5
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