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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14776 and 14777 are separated by 250 nucleotides
14777 and 14778 are separated by 641 nucleotides
14778 and 14779 are separated by 1197 nucleotides
14779 and 14780 are separated by 196 nucleotides
mRNA_6408: 14776 - K19308 BMT6 25S rRNA (uracil2843-N3)-methyltransferase, at 740,308 to 741,629
14776
mRNA_6409: 14777 - KOG2806 Chitinase, at 741,880 to 743,909
14777
mRNA_6410: 14778 - HMMPfam-Peptidase inhibitor I9-PF05922,SUPERFAMILY--SSF54897, at 744,551 to 744,938
14778
mRNA_6411: 14779 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 746,136 to 749,829
14779
mRNA_6412: 14780 - HMMPfam-F-box-like-PF12937, at 750,026 to 751,228
14780
Group
Condition
mRNA
_6408
mRNA
_6409
mRNA
_6410
mRNA
_6411
mRNA
_6412
14776
14777
14778
14779
14780
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.3
-0.4
-0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
-0.6
+0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.3
-0.6
-0.4
auxotrophy
YNB Glucose
-0.4
-0.0
-0.6
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.3
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.2
-0.2
+0.8
-0.3
growth on ypd
YPD
-0.2
+0.2
+0.4
-0.7
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.0
-0.5
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.3
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-1.1
+1.4
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.1
-1.0
+0.8
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.1
+0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.2
+0.7
+0.5
growth on oleic acid
YNB Glucose
+0.2
-0.0
-0.2
+1.2
-0.0
auxotrophy
Dropout Complete
+0.0
-0.0
-0.3
+1.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
-0.3
+1.0
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.3
+0.2
+1.8
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.4
+0.5
+0.8
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.4
+0.5
+1.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
+0.1
+2.8
+0.3
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