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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14778 and 14779 are separated by 1197 nucleotides
14779 and 14780 are separated by 196 nucleotides
14780 and 14781 are separated by 198 nucleotides
14781 and 14782 are separated by 768 nucleotides
mRNA_6410: 14778 - HMMPfam-Peptidase inhibitor I9-PF05922,SUPERFAMILY--SSF54897, at 744,551 to 744,938
14778
mRNA_6411: 14779 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 746,136 to 749,829
14779
mRNA_6412: 14780 - HMMPfam-F-box-like-PF12937, at 750,026 to 751,228
14780
mRNA_6413: 14781 - K08490 STX5 syntaxin 5, at 751,427 to 753,086
14781
mRNA_6414: 14782 - K15731 CTDSP carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, at 753,855 to 754,896
14782
Group
Condition
mRNA
_6410
mRNA
_6411
mRNA
_6412
mRNA
_6413
mRNA
_6414
14778
14779
14780
14781
14782
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.6
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.2
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.5
+0.1
N.D.
N.D.
growth on ypd
YPD
+0.4
-0.7
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.1
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.6
+0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.8
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
+1.4
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.8
+0.7
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+1.2
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.7
+0.5
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
+1.5
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+1.0
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+1.8
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.8
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+1.2
+0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+2.8
+0.3
N.D.
N.D.
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