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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14780 and 14781 are separated by 198 nucleotides
14781 and 14782 are separated by 768 nucleotides
14782 and 14783 are separated by 1840 nucleotides
14783 and 14784 are separated by 373 nucleotides
mRNA_6412: 14780 - HMMPfam-F-box-like-PF12937, at 750,026 to 751,228
14780
mRNA_6413: 14781 - K08490 STX5 syntaxin 5, at 751,427 to 753,086
14781
mRNA_6414: 14782 - K15731 CTDSP carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, at 753,855 to 754,896
14782
mRNA_6415: 14783 - Hypothetical Protein, at 756,737 to 757,520
14783
mRNA_6416: 14784 - Hypothetical Protein, at 757,894 to 758,331
14784
Group
Condition
mRNA
_6412
mRNA
_6413
mRNA
_6414
mRNA
_6415
mRNA
_6416
14780
14781
14782
14783
14784
growth on ypd
YPD
-0.1
N.D.
N.D.
-0.8
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
N.D.
-1.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
N.D.
-0.8
+0.2
auxotrophy
Dropout Complete
+0.0
N.D.
N.D.
-0.9
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
N.D.
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
N.D.
-0.9
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
N.D.
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
N.D.
-0.6
-0.4
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
N.D.
-0.6
+0.2
auxotrophy
YNB Glucose
+0.2
N.D.
N.D.
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
N.D.
N.D.
-0.8
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
N.D.
-0.1
+0.4
growth on oleic acid
YNB Glucose
-0.0
N.D.
N.D.
-0.4
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.4
+0.9
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
N.D.
-0.3
+1.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
N.D.
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
N.D.
+0.6
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
+0.0
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
N.D.
+1.1
+0.3
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