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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14785 and 14786 are separated by 267 nucleotides
14786 and 14787 are separated by 416 nucleotides
14787 and 14788 are separated by 83 nucleotides
14788 and 14789 are separated by 215 nucleotides
mRNA_6417: 14785 - Hypothetical Protein, at 758,941 to 760,073
14785
mRNA_6418: 14786 - K02127 ATPeF0B, ATP5F1, ATP4 F-type H+-transporting ATPase subunit b, at 760,341 to 761,286
14786
mRNA_6419: 14787 - KOG0744 AAA+-type ATPase, at 761,703 to 763,959
14787
mRNA_6420: 14788 - K14263 BNA7 kynurenine formamidase, at 764,043 to 765,055
14788
mRNA_6421: 14789 - SUPERFAMILY--SSF82199, at 765,271 to 766,029
14789
Group
Condition
mRNA
_6417
mRNA
_6418
mRNA
_6419
mRNA
_6420
mRNA
_6421
14785
14786
14787
14788
14789
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
N.D.
+0.7
+0.1
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
-0.4
-0.2
-0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.2
-0.1
-1.0
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.3
+0.1
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
+0.1
+0.0
-0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
-0.3
-0.2
-0.6
growth on oleic acid
YNB Glucose
+0.3
N.D.
-0.3
-0.4
-0.3
auxotrophy
YNB Glucose
+0.1
N.D.
-0.3
+0.2
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
+0.2
-0.1
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
+0.2
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.0
+0.2
auxotrophy
Dropout Complete
+0.5
N.D.
-0.2
+0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.3
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
+0.0
+0.0
-0.2
growth on ypd
YPD
+0.3
N.D.
-0.4
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
-0.4
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
-0.2
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-0.1
+0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
N.D.
+0.0
+0.1
-0.1
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