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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14788 and 14789 are separated by 215 nucleotides
14789 and 14790 are separated by 0 nucleotides
14790 and 14791 are separated by 412 nucleotides
14791 and 14792 are separated by 86 nucleotides
mRNA_6420: 14788 - K14263 BNA7 kynurenine formamidase, at 764,043 to 765,055
14788
mRNA_6421: 14789 - SUPERFAMILY--SSF82199, at 765,271 to 766,029
14789
mRNA_6422: 14790 - KOG2084 Predicted histone tail methylase containing SET domain, at 766,030 to 767,975
14790
mRNA_6423: 14791 - Hypothetical Protein, at 768,388 to 769,029
14791
mRNA_6424: 14792 - Hypothetical Protein, at 769,116 to 769,372
14792
Group
Condition
mRNA
_6420
mRNA
_6421
mRNA
_6422
mRNA
_6423
mRNA
_6424
14788
14789
14790
14791
14792
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.8
-0.8
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.9
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.8
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-1.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.3
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.8
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.1
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.6
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.5
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
-0.5
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose
+0.2
-0.6
+0.1
N.D.
N.D.
growth on ypd
YPD
-0.1
+0.4
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.3
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.4
-0.2
N.D.
N.D.
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