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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14792 and 14793 are separated by 109 nucleotides
14793 and 14794 are separated by 294 nucleotides
14794 and 14795 are separated by 106 nucleotides
14795 and 14796 are separated by 854 nucleotides
mRNA_6424: 14792 - Hypothetical Protein, at 769,116 to 769,372
14792
mRNA_6425: 14793 - SUPERFAMILY--SSF52047, at 769,482 to 770,429
14793
mRNA_6426: 14794 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 770,724 to 773,097
14794
mRNA_6427: 14795 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 773,204 to 778,326
14795
mRNA_6428: 14796 - KOG2208 Vigilin, at 779,181 to 783,068
14796
Group
Condition
mRNA
_6424
mRNA
_6425
mRNA
_6426
mRNA
_6427
mRNA
_6428
14792
14793
14794
14795
14796
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.4
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.8
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
N.D.
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.7
N.D.
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
N.D.
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
N.D.
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
N.D.
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
N.D.
+0.0
+0.2
growth on oleic acid
YNB Glucose
N.D.
-0.4
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.7
N.D.
+0.1
+0.4
auxotrophy
Dropout Complete
N.D.
-0.5
N.D.
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
N.D.
+0.2
-0.0
growth on ypd
YPD
N.D.
+0.0
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
N.D.
+0.1
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.8
N.D.
+0.4
+0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
N.D.
+0.3
+0.7
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