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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14793 and 14794 are separated by 294 nucleotides
14794 and 14795 are separated by 106 nucleotides
14795 and 14796 are separated by 854 nucleotides
14796 and 14797 are separated by 1096 nucleotides
mRNA_6425: 14793 - SUPERFAMILY--SSF52047, at 769,482 to 770,429
14793
mRNA_6426: 14794 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 770,724 to 773,097
14794
mRNA_6427: 14795 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 773,204 to 778,326
14795
mRNA_6428: 14796 - KOG2208 Vigilin, at 779,181 to 783,068
14796
mRNA_6429: 14797 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 784,165 to 784,634
14797
Group
Condition
mRNA
_6425
mRNA
_6426
mRNA
_6427
mRNA
_6428
mRNA
_6429
14793
14794
14795
14796
14797
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
N.D.
-0.1
-0.4
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.0
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
N.D.
-0.0
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.7
N.D.
+0.1
+0.4
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
-0.0
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.2
-0.0
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
N.D.
-0.1
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
+0.1
-0.2
+0.1
growth on oleic acid
YNB Glucose
-0.4
N.D.
+0.0
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.1
+0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.1
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
N.D.
+0.0
+0.2
+0.2
auxotrophy
YNB Glucose
+0.1
N.D.
-0.0
+0.1
-0.1
auxotrophy
Dropout Complete
-0.5
N.D.
+0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
N.D.
+0.0
+0.3
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.3
+0.7
-0.7
growth on ypd
YPD
+0.0
N.D.
+0.1
-0.1
+1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
N.D.
+0.4
+0.9
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.1
+0.6
+1.8
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