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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14798 and 14799 are separated by 380 nucleotides
14799 and 14800 are separated by 402 nucleotides
14800 and 14801 are separated by 542 nucleotides
14801 and 14802 are separated by 197 nucleotides
mRNA_6430: 14798 - KOG3112 Uncharacterized conserved protein, at 785,004 to 786,145
14798
mRNA_6431: 14799 - Hypothetical Protein, at 786,526 to 787,659
14799
mRNA_6432: 14800 - K18203 LCMT1 [phosphatase 2A protein]-leucine-carboxy methyltransferase, at 788,062 to 789,443
14800
mRNA_6433: 14801 - K12180 COPS7, CSN7 COP9 signalosome complex subunit 7, at 789,986 to 791,469
14801
mRNA_6434: 14802 - K01904 4CL 4-coumarate--CoA ligase, at 791,667 to 793,929
14802
Group
Condition
mRNA
_6430
mRNA
_6431
mRNA
_6432
mRNA
_6433
mRNA
_6434
14798
14799
14800
14801
14802
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.0
-0.4
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
-0.4
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.7
+0.2
-1.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.2
-0.6
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.3
-0.3
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.1
-1.0
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.5
+0.3
-0.9
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
+0.3
-0.6
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.4
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.2
+0.4
+0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.6
+0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.1
+0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
-0.2
+0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.6
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.3
+0.1
-0.0
+0.1
growth on ypd
YPD
+0.3
-0.2
+0.5
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.3
+0.3
+0.3
+0.2
auxotrophy
YNB Glucose
-0.2
+0.3
+0.3
+0.2
+0.1
auxotrophy
Dropout Complete
-0.5
+0.7
+0.6
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.1
+0.1
+0.2
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.4
+0.5
+0.2
-0.1
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