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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14801 and 14802 are separated by 197 nucleotides
14802 and 14803 are separated by 232 nucleotides
14803 and 14804 are separated by 192 nucleotides
14804 and 14805 are separated by 275 nucleotides
mRNA_6433: 14801 - K12180 COPS7, CSN7 COP9 signalosome complex subunit 7, at 789,986 to 791,469
14801
mRNA_6434: 14802 - K01904 4CL 4-coumarate--CoA ligase, at 791,667 to 793,929
14802
mRNA_6435: 14803 - K01930 FPGS folylpolyglutamate synthase, at 794,162 to 796,213
14803
mRNA_6436: 14804 - SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 796,406 to 797,649
14804
mRNA_6437: 14805 - K07511 ECHS1 enoyl-CoA hydratase, at 797,925 to 799,246
14805
Group
Condition
mRNA
_6433
mRNA
_6434
mRNA
_6435
mRNA
_6436
mRNA
_6437
14801
14802
14803
14804
14805
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.1
N.D.
-0.0
-4.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.1
N.D.
+0.1
-4.0
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
N.D.
-0.0
-2.9
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
-0.1
N.D.
-0.5
+0.4
growth on ricinoleic acid
YNB Glucose
-0.6
-0.1
N.D.
-0.4
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
N.D.
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
-0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
N.D.
-0.2
+0.1
growth on oleic acid
YNB Glucose
+0.2
-0.1
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.0
N.D.
+0.1
+0.5
auxotrophy
Dropout Complete
+0.1
-0.0
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
+0.2
+0.1
N.D.
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.0
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.2
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
N.D.
-0.1
+0.4
growth on ypd
YPD
+0.3
-0.1
N.D.
+0.4
+0.5
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