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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14807 and 14808 are separated by 439 nucleotides
14808 and 14809 are separated by 131 nucleotides
14809 and 14810 are separated by 40 nucleotides
14810 and 14811 are separated by 414 nucleotides
mRNA_6439: 14807 - Hypothetical Protein, at 801,024 to 801,752
14807
mRNA_6440: 14808 - Hypothetical Protein, at 802,192 to 802,893
14808
mRNA_6441: 14809 - K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit, at 803,025 to 805,267
14809
mRNA_6442: 14810 - Hypothetical Protein, at 805,308 to 806,483
14810
mRNA_6443: 14811 - K10427 DCTN5 dynactin 5, at 806,898 to 807,775
14811
Group
Condition
mRNA
_6439
mRNA
_6440
mRNA
_6441
mRNA
_6442
mRNA
_6443
14807
14808
14809
14810
14811
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
+0.0
-4.6
+0.3
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.2
-4.5
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.8
-2.4
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
+0.6
-0.1
-3.8
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-0.5
+0.3
-2.7
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
-0.7
+0.1
-2.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.5
+0.3
-1.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.6
-1.2
+0.2
-0.2
auxotrophy
YNB Glucose
+0.2
+0.2
-0.6
+0.2
-1.7
growth on ypd
YPD
-0.2
-0.1
-0.1
+0.1
-1.3
auxotrophy
Dropout Complete
+0.3
+0.2
-0.5
+0.4
-2.0
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
+0.0
+0.2
-1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
-1.0
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.0
-0.1
+0.1
-1.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.4
+0.2
+0.1
-0.9
growth on ricinoleic acid
YNB Glucose
+0.4
-0.4
-0.4
+0.1
-0.7
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.2
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
-1.3
+0.3
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
-0.9
+0.2
+1.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
-0.6
+0.1
+2.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.2
-0.4
+0.4
+2.3
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