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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14809 and 14810 are separated by 40 nucleotides
14810 and 14811 are separated by 414 nucleotides
14811 and 14812 are separated by 630 nucleotides
14812 and 14813 are separated by 805 nucleotides
mRNA_6441: 14809 - K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit, at 803,025 to 805,267
14809
mRNA_6442: 14810 - Hypothetical Protein, at 805,308 to 806,483
14810
mRNA_6443: 14811 - K10427 DCTN5 dynactin 5, at 806,898 to 807,775
14811
mRNA_6444: 14812 - Hypothetical Protein, at 808,406 to 809,831
14812
mRNA_6445: 14813 - KOG2896 UV radiation resistance associated protein, at 810,637 to 814,255
14813
Group
Condition
mRNA
_6441
mRNA
_6442
mRNA
_6443
mRNA
_6444
mRNA
_6445
14809
14810
14811
14812
14813
growth on ricinoleic acid
YNB Methylricinoleic Acid
-4.6
+0.3
-1.3
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-4.5
+0.2
-0.3
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.1
-2.4
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-3.8
+0.1
+0.5
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.3
-2.7
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-2.4
+0.3
-0.4
+0.0
-0.1
auxotrophy
YNB Glucose
-0.6
+0.2
-1.7
+0.2
-0.1
auxotrophy
Dropout Complete
-0.5
+0.4
-2.0
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.3
-1.7
+0.1
+0.1
growth on ypd
YPD
-0.1
+0.1
-1.3
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
-1.4
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.2
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-1.0
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
-0.7
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
+0.2
-0.2
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.9
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.3
+0.3
+0.8
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.2
+1.6
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.4
+2.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.1
+2.3
+0.1
+0.4
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