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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14816 and 14817 are separated by 428 nucleotides
14817 and 14818 are separated by 649 nucleotides
14818 and 14819 are separated by 852 nucleotides
14819 and 14820 are separated by 613 nucleotides
mRNA_6448: 14816 - HMMPfam-F-box-like-PF12937, at 817,584 to 818,438
14816
mRNA_6449: 14817 - HMMPfam-Protein of unknown function (DUF1399)-PF07173, at 818,867 to 821,319
14817
mRNA_6450: 14818 - Hypothetical Protein, at 821,969 to 822,682
14818
mRNA_6451: 14819 - Hypothetical Protein, at 823,535 to 824,941
14819
mRNA_6452: 14820 - Hypothetical Protein, at 825,555 to 826,689
14820
Group
Condition
mRNA
_6448
mRNA
_6449
mRNA
_6450
mRNA
_6451
mRNA
_6452
14816
14817
14818
14819
14820
growth on oleic acid
YNB Glucose
-0.5
-0.3
-0.3
-0.0
+0.1
growth on ypd
YPD
-1.0
+0.3
+0.0
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.4
-0.2
-0.4
-0.6
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
-0.2
-0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.0
+0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
-0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.1
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.0
+0.6
-0.1
+0.2
auxotrophy
YNB Glucose
+0.6
+0.1
-0.3
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
+0.1
-0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.1
-0.3
-0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
-0.3
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
-0.2
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.2
-0.1
+0.2
auxotrophy
Dropout Complete
+0.0
-0.0
+0.1
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
-0.0
+0.1
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.0
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.1
-0.1
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
+0.2
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.1
+0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.9
+0.0
+0.3
-0.2
+0.0
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