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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14818 and 14819 are separated by 852 nucleotides
14819 and 14820 are separated by 613 nucleotides
14820 and 14821 are separated by 546 nucleotides
14821 and 14822 are separated by 692 nucleotides
mRNA_6450: 14818 - Hypothetical Protein, at 821,969 to 822,682
14818
mRNA_6451: 14819 - Hypothetical Protein, at 823,535 to 824,941
14819
mRNA_6452: 14820 - Hypothetical Protein, at 825,555 to 826,689
14820
mRNA_6453: 14821 - K03801 lipB lipoyl(octanoyl) transferase, at 827,236 to 828,223
14821
mRNA_6454: 14822 - BLAST putative nucleoporin-interacting protein NIC96 [Rhizo..., at 828,916 to 829,758
14822
Group
Condition
mRNA
_6450
mRNA
_6451
mRNA
_6452
mRNA
_6453
mRNA
_6454
14818
14819
14820
14821
14822
growth on ricinoleic acid
YNB Glucose
-0.4
-0.6
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose
-0.3
-0.5
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.5
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.4
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.0
+0.1
N.D.
N.D.
growth on ypd
YPD
+0.0
-0.1
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.2
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
-0.1
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.1
+0.2
N.D.
N.D.
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