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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14819 and 14820 are separated by 613 nucleotides
14820 and 14821 are separated by 546 nucleotides
14821 and 14822 are separated by 692 nucleotides
14822 and 14823 are separated by 159 nucleotides
mRNA_6451: 14819 - Hypothetical Protein, at 823,535 to 824,941
14819
mRNA_6452: 14820 - Hypothetical Protein, at 825,555 to 826,689
14820
mRNA_6453: 14821 - K03801 lipB lipoyl(octanoyl) transferase, at 827,236 to 828,223
14821
mRNA_6454: 14822 - BLAST putative nucleoporin-interacting protein NIC96 [Rhizo..., at 828,916 to 829,758
14822
mRNA_6455: 14823 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 829,918 to 832,599
14823
Group
Condition
mRNA
_6451
mRNA
_6452
mRNA
_6453
mRNA
_6454
mRNA
_6455
14819
14820
14821
14822
14823
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
N.D.
N.D.
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
N.D.
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
N.D.
N.D.
-0.7
growth on ricinoleic acid
YNB Glucose
-0.6
+0.2
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose
-0.5
+0.3
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
N.D.
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
N.D.
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.1
N.D.
N.D.
-0.1
growth on ypd
YPD
-0.1
-0.0
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.1
N.D.
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
N.D.
N.D.
-0.3
auxotrophy
Dropout Complete
-0.1
+0.3
N.D.
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.0
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
N.D.
+0.4
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