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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14821 and 14822 are separated by 692 nucleotides
14822 and 14823 are separated by 159 nucleotides
14823 and 14824 are separated by 363 nucleotides
14824 and 14825 are separated by 148 nucleotides
mRNA_6453: 14821 - K03801 lipB lipoyl(octanoyl) transferase, at 827,236 to 828,223
14821
mRNA_6454: 14822 - BLAST putative nucleoporin-interacting protein NIC96 [Rhizo..., at 828,916 to 829,758
14822
mRNA_6455: 14823 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 829,918 to 832,599
14823
mRNA_6456: 14824 - KOG3386 Copper transporter, at 832,963 to 833,757
14824
mRNA_6457: 14825 - Hypothetical Protein, at 833,906 to 834,580
14825
Group
Condition
mRNA
_6453
mRNA
_6454
mRNA
_6455
mRNA
_6456
mRNA
_6457
14821
14822
14823
14824
14825
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
-0.6
-1.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
-1.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.1
-1.7
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.7
-0.0
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
-0.8
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
-0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
-0.8
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.6
-0.8
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
-0.3
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-1.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.4
-0.5
auxotrophy
Dropout Complete
N.D.
N.D.
+0.0
-0.5
-0.1
growth on ypd
YPD
N.D.
N.D.
+0.1
-0.6
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.0
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
-0.6
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.3
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.0
+1.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.5
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.4
+0.0
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
+0.1
+1.1
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