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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14833 and 14834 are separated by 689 nucleotides
14834 and 14835 are separated by 294 nucleotides
14835 and 14836 are separated by 482 nucleotides
14836 and 14837 are separated by 111 nucleotides
mRNA_6465: 14833 - Hypothetical Protein, at 847,070 to 847,704
14833
mRNA_6466: 14834 - Hypothetical Protein, at 848,394 to 849,782
14834
mRNA_6467: 14835 - K20242 EVI5 ecotropic viral integration site 5 protein, at 850,077 to 853,413
14835
mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853,896 to 857,931
14836
mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858,043 to 864,348
14837
Group
Condition
mRNA
_6465
mRNA
_6466
mRNA
_6467
mRNA
_6468
mRNA
_6469
14833
14834
14835
14836
14837
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
-0.4
N.D.
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
+0.2
N.D.
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
-0.3
N.D.
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.3
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
+0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+0.5
-0.0
-0.3
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
-0.1
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
+0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
-0.0
N.D.
-0.6
auxotrophy
YNB Glucose
+0.2
-0.2
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.1
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.1
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
-0.1
N.D.
+0.2
auxotrophy
Dropout Complete
+0.2
-0.2
+0.0
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.2
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
+0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.2
N.D.
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.4
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.0
+0.1
N.D.
+0.3
growth on ypd
YPD
-0.1
+0.2
+0.2
N.D.
+0.7
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