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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14834 and 14835 are separated by 294 nucleotides
14835 and 14836 are separated by 482 nucleotides
14836 and 14837 are separated by 111 nucleotides
14837 and 14838 are separated by 396 nucleotides
mRNA_6466: 14834 - Hypothetical Protein, at 848,394 to 849,782
14834
mRNA_6467: 14835 - K20242 EVI5 ecotropic viral integration site 5 protein, at 850,077 to 853,413
14835
mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853,896 to 857,931
14836
mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858,043 to 864,348
14837
mRNA_6470: 14838 - Hypothetical Protein, at 864,745 to 865,870
14838
Group
Condition
mRNA
_6466
mRNA
_6467
mRNA
_6468
mRNA
_6469
mRNA
_6470
14834
14835
14836
14837
14838
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
N.D.
-0.9
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.4
N.D.
-1.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
N.D.
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
N.D.
-0.5
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
N.D.
-0.7
+0.1
auxotrophy
YNB Glucose
-0.2
+0.1
N.D.
-0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
N.D.
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
N.D.
+0.0
-0.2
auxotrophy
Dropout Complete
-0.2
+0.0
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
N.D.
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
N.D.
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
N.D.
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
N.D.
-0.3
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
N.D.
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.4
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
N.D.
+0.4
+0.1
growth on ypd
YPD
+0.2
+0.2
N.D.
+0.7
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
N.D.
+0.6
+0.4
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