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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14837 and 14838 are separated by 396 nucleotides
14838 and 14839 are separated by 355 nucleotides
14839 and 14840 are separated by 96 nucleotides
14840 and 14841 are separated by 295 nucleotides
mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858,043 to 864,348
14837
mRNA_6470: 14838 - Hypothetical Protein, at 864,745 to 865,870
14838
mRNA_6471: 14839 - KOG0806 Carbon-nitrogen hydrolase, at 866,226 to 867,912
14839
mRNA_6472: 14840 - Hypothetical Protein, at 868,009 to 868,986
14840
mRNA_6473: 14841 - HMMPfam-XPG domain containing-PF12813,SUPERFAMILY--SSF88723, at 869,282 to 871,336
14841
Group
Condition
mRNA
_6469
mRNA
_6470
mRNA
_6471
mRNA
_6472
mRNA
_6473
14837
14838
14839
14840
14841
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
+0.1
+0.2
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.1
-0.5
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.5
+0.0
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
-0.1
+0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.1
+0.3
+0.4
-0.2
auxotrophy
YNB Glucose
-0.0
-0.4
-0.1
+0.0
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.1
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.2
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
-0.2
+0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.2
+0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.4
+0.4
-0.1
growth on ypd
YPD
+0.7
-0.0
-0.1
+0.0
-0.4
auxotrophy
Dropout Complete
+0.3
-0.3
-0.0
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.0
+0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
-0.0
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.2
-0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.4
+0.0
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
+0.2
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.5
+0.2
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.4
+0.3
+0.1
+0.6
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