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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14841 and 14842 are separated by 392 nucleotides
14842 and 14843 are separated by 211 nucleotides
14843 and 14844 are separated by 227 nucleotides
14844 and 14845 are separated by 723 nucleotides
mRNA_6473: 14841 - HMMPfam-XPG domain containing-PF12813,SUPERFAMILY--SSF88723, at 869,282 to 871,336
14841
mRNA_6474: 14842 - HMMPfam-Vitamin-D-receptor interacting Mediator subunit 4-PF10018, at 871,729 to 872,994
14842
mRNA_6475: 14843 - KOG3442 Uncharacterized conserved protein, at 873,206 to 873,968
14843
mRNA_6476: 14844 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 874,196 to 881,716
14844
mRNA_6477: 14845 - HMMPfam-Catalytic LigB subunit of aromatic ring-opening dioxygenase-PF02900,SUPERFAMILY--SSF53213, at 882,440 to 883,452
14845
Group
Condition
mRNA
_6473
mRNA
_6474
mRNA
_6475
mRNA
_6476
mRNA
_6477
14841
14842
14843
14844
14845
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
N.D.
-0.0
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
N.D.
+0.0
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.0
N.D.
-0.2
+0.0
growth on oleic acid
YNB Glucose
-0.3
+0.0
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
N.D.
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.5
N.D.
+0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
N.D.
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.5
N.D.
+0.3
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.9
N.D.
+0.2
-1.0
growth on ypd
YPD
-0.4
+0.3
N.D.
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
+0.4
N.D.
+0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
N.D.
+0.4
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
N.D.
+0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
N.D.
-0.0
-0.0
auxotrophy
YNB Glucose
+0.1
+0.2
N.D.
+0.0
-0.0
auxotrophy
Dropout Complete
+0.1
+0.6
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
N.D.
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+1.2
N.D.
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
N.D.
-0.0
+0.2
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