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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14848 and 14849 are separated by 320 nucleotides
14849 and 14850 are separated by 192 nucleotides
14850 and 14851 are separated by 656 nucleotides
14851 and 14852 overlap by 11 nucleotides
mRNA_6480: 14848 - Hypothetical Protein, at 891,101 to 891,716
14848
mRNA_6481: 14849 - K02201 E2.7.7.3B pantetheine-phosphate adenylyltransferase, at 892,037 to 893,331
14849
mRNA_6482: 14850 - Hypothetical Protein, at 893,524 to 894,299
14850
mRNA_6483: 14851 - Hypothetical Protein, at 894,956 to 895,414
14851
mRNA_6484: 14852 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 895,404 to 896,559
14852
Group
Condition
mRNA
_6480
mRNA
_6481
mRNA
_6482
mRNA
_6483
mRNA
_6484
14848
14849
14850
14851
14852
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.1
+0.1
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
-0.4
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
+0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
-0.7
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
-0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.0
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
+0.4
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.5
+0.0
+0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.6
+0.6
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.3
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
-0.3
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
+0.4
-0.4
growth on ypd
YPD
N.D.
N.D.
+0.4
-0.6
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.6
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.5
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
+0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.7
+0.3
+0.1
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