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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14849 and 14850 are separated by 192 nucleotides
14850 and 14851 are separated by 656 nucleotides
14851 and 14852 overlap by 11 nucleotides
14852 and 14853 are separated by 1881 nucleotides
mRNA_6481: 14849 - K02201 E2.7.7.3B pantetheine-phosphate adenylyltransferase, at 892,037 to 893,331
14849
mRNA_6482: 14850 - Hypothetical Protein, at 893,524 to 894,299
14850
mRNA_6483: 14851 - Hypothetical Protein, at 894,956 to 895,414
14851
mRNA_6484: 14852 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 895,404 to 896,559
14852
mRNA_6485: 14853 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 898,441 to 899,753
14853
Group
Condition
mRNA
_6481
mRNA
_6482
mRNA
_6483
mRNA
_6484
mRNA
_6485
14849
14850
14851
14852
14853
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
+0.1
-1.1
-1.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.1
-0.4
-0.4
auxotrophy
YNB Glucose
N.D.
-0.3
+0.2
-0.6
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
-0.3
-0.5
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.2
-0.4
-0.1
growth on ypd
YPD
N.D.
+0.4
-0.6
+0.3
-0.4
auxotrophy
Dropout Complete
N.D.
-0.6
+0.6
-0.5
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.7
-0.2
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.4
-0.6
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-0.4
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.4
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.4
-0.3
+0.9
growth on oleic acid
YNB Oleic Acid
N.D.
+0.6
-0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.0
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.0
+0.0
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
+0.1
-0.1
+1.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.2
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.1
-0.1
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.2
+0.2
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
+0.0
+0.1
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
+0.3
+0.1
+1.1
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