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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14851 and 14852 overlap by 11 nucleotides
14852 and 14853 are separated by 1881 nucleotides
14853 and 14854 are separated by 499 nucleotides
14854 and 14855 are separated by 775 nucleotides
mRNA_6483: 14851 - Hypothetical Protein, at 894,956 to 895,414
14851
mRNA_6484: 14852 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 895,404 to 896,559
14852
mRNA_6485: 14853 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 898,441 to 899,753
14853
mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900,253 to 901,810
14854
mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902,586 to 904,816
14855
Group
Condition
mRNA
_6483
mRNA
_6484
mRNA
_6485
mRNA
_6486
mRNA
_6487
14851
14852
14853
14854
14855
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.1
-1.6
+0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.4
-0.4
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.5
-0.4
-0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.4
-0.1
-0.0
-0.1
growth on ypd
YPD
-0.6
+0.3
-0.4
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.2
+0.5
-0.0
+0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
-0.1
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+1.0
+0.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
+0.2
+0.2
+0.8
auxotrophy
YNB Glucose
+0.2
-0.6
-0.1
+0.5
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.4
+0.2
+0.0
+0.6
growth on oleic acid
YNB Glucose
-0.0
+0.2
-0.1
-0.0
+0.7
auxotrophy
Dropout Complete
+0.6
-0.5
+0.2
+0.2
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.3
+0.9
+0.7
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+1.0
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.6
+0.3
+0.6
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.0
+1.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+1.2
+0.1
+0.5
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.4
+0.5
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
+0.9
+0.6
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
+1.1
+0.7
+1.2
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