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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14853 and 14854 are separated by 499 nucleotides
14854 and 14855 are separated by 775 nucleotides
14855 and 14856 are separated by 355 nucleotides
14856 and 14857 are separated by 394 nucleotides
mRNA_6485: 14853 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 898,441 to 899,753
14853
mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900,253 to 901,810
14854
mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902,586 to 904,816
14855
mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905,172 to 907,549
14856
mRNA_6489: 14857 - KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases, at 907,944 to 911,303
14857
Group
Condition
mRNA
_6485
mRNA
_6486
mRNA
_6487
mRNA
_6488
mRNA
_6489
14853
14854
14855
14856
14857
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
+0.3
-0.2
-1.0
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.0
+0.5
-3.9
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.6
-4.3
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
+0.0
-0.5
-3.2
+0.3
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.7
-3.8
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.0
-0.1
+0.4
-3.3
-0.1
auxotrophy
YNB Glucose
-0.1
+0.5
+0.6
-3.9
+0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.6
+0.7
-4.3
+0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+0.7
+0.4
-4.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
+0.8
-3.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.7
-2.9
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
+0.1
+0.5
-3.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
+0.2
+0.2
-2.8
+0.2
growth on ypd
YPD
-0.4
+0.3
-0.2
-0.7
+0.2
growth on ricinoleic acid
YNB Glucose
+0.4
+0.5
+0.6
-2.7
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.0
+0.4
-0.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
-0.0
+0.9
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
+0.7
+0.0
auxotrophy
Dropout Complete
+0.2
+0.2
+0.6
-1.5
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.6
+1.0
-2.8
+1.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
+0.7
+1.2
-2.0
+1.2
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