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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14859 and 14860 are separated by 621 nucleotides
14860 and 14861 are separated by 156 nucleotides
14861 and 14862 are separated by 256 nucleotides
14862 and 14863 are separated by 393 nucleotides
mRNA_6491: 14859 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 912,748 to 918,213
14859
mRNA_6492: 14860 - KOG3269 Predicted membrane protein, at 918,835 to 919,868
14860
mRNA_6493: 14861 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 920,025 to 920,861
14861
mRNA_6494: 14862 - KOG2885 Uncharacterized conserved protein, at 921,118 to 925,522
14862
mRNA_6495: 14863 - Hypothetical Protein, at 925,916 to 926,829
14863
Group
Condition
mRNA
_6491
mRNA
_6492
mRNA
_6493
mRNA
_6494
mRNA
_6495
14859
14860
14861
14862
14863
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.9
N.D.
-0.7
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.5
N.D.
-0.4
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.6
N.D.
-0.0
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
N.D.
-0.5
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.9
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.2
N.D.
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
N.D.
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
N.D.
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
N.D.
+0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.6
N.D.
-0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
N.D.
+0.1
+0.5
growth on ypd
YPD
+0.1
+0.2
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose
+0.0
-0.2
N.D.
+0.1
+0.5
growth on oleic acid
YNB Glucose
+0.1
+0.1
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.4
N.D.
+0.1
+0.2
auxotrophy
Dropout Complete
+0.3
+0.2
N.D.
+0.1
+0.5
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